AirHint found the following cheapest return flights from Munich (MUC) to Prague (PRG) in September 2025 (see full year).

Return flights

08 Sep - 10 Sep	Eurowings
11 Sep - 15 Sep	Eurowings
23 Sep - 30 Sep	Lufthansa	direct
08 Sep - 15 Sep	Lufthansa	direct
04 Sep - 11 Sep	Lufthansa	direct
02 Sep - 03 Sep	easyJet
05 Sep - 08 Sep	Eurowings
01 Sep - 03 Sep	easyJet
22 Sep - 27 Sep	Vueling Airlines
01 Sep - 04 Sep	easyJet

Also check the deals for one-way flights from Munich to Prague in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Munich to Prague in September from 144€

Return flights