AirHint found the following cheapest return flights from Malta (MLA) to Tokyo (NRT) in September 2025 (see full year).

Return flights

11 Sep - 28 Sep	Ryanair
21 Sep - 30 Sep	easyJet
02 Sep - 23 Sep	KLM
01 Sep - 16 Sep	KLM
08 Sep - 28 Sep	Turkish Airlines
15 Sep - 06 Oct	Wizz Air
04 Sep - 23 Sep	KLM
16 Sep - 07 Oct	KLM
30 Sep - 14 Oct	KLM
04 Sep - 26 Sep	KLM
06 Sep - 26 Sep	KLM
11 Sep - 21 Sep	KM Malta Airlines
11 Sep - 17 Sep	KM Malta Airlines

Also check the deals for one-way flights from Malta to Tokyo in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Malta to Tokyo in September from 768€

Return flights