AirHint found the following cheapest return flights from Prague (PRG) to Malta (MLA) in September 2025 (see full year).

Return flights

17 Sep - 25 Sep	easyJet
19 Sep - 25 Sep	Ryanair
13 Sep - 17 Sep	Ryanair
12 Sep - 16 Sep	Ryanair
25 Sep - 02 Oct	Ryanair
13 Sep - 18 Sep	Ryanair
02 Sep - 06 Sep	KM Malta Airlines	direct
04 Sep - 09 Sep	KM Malta Airlines	direct
13 Sep - 18 Sep	KM Malta Airlines	direct
11 Sep - 18 Sep	Ryanair
01 Sep - 04 Sep	easyJet
30 Sep - 07 Oct	Ryanair
27 Sep - 08 Oct	Ryanair
25 Sep - 04 Oct	Ryanair
30 Sep - 04 Oct	Ryanair
24 Sep - 01 Oct	Wizz Air Malta
27 Sep - 04 Oct	Ryanair
20 Sep - 04 Oct	Ryanair
25 Sep - 02 Oct	KM Malta Airlines	direct
30 Sep - 07 Oct	KM Malta Airlines	direct

Also check the deals for one-way flights from Prague to Malta in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Prague to Malta in September from 128€

Return flights