AirHint found the following cheapest return flights from Prague (PRG) to Malta (MLA) in September 2025 (see full year).

Return flights

23 Sep - 30 Sep	Ryanair
22 Sep - 30 Sep	Wizz Air Malta
22 Sep - 25 Sep	Wizz Air Malta
23 Sep - 25 Sep	Ryanair
24 Sep - 28 Sep	Wizz Air Malta
22 Sep - 28 Sep	Wizz Air Malta
27 Sep - 06 Oct	Wizz Air Malta
11 Sep - 20 Sep	Ryanair
25 Sep - 30 Sep	Ryanair
26 Sep - 01 Oct	Ryanair
22 Sep - 29 Sep	Wizz Air Malta
24 Sep - 30 Sep	Ryanair
29 Sep - 06 Oct	Wizz Air Malta
25 Sep - 02 Oct	Ryanair
30 Sep - 07 Oct	Ryanair
27 Sep - 02 Oct	easyJet
06 Sep - 04 Oct	Ryanair
29 Sep - 12 Oct	Wizz Air Malta
27 Sep - 05 Oct	easyJet
27 Sep - 02 Oct	KM Malta Airlines	direct

Also check the deals for one-way flights from Prague to Malta in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

Book a cheap hotel in Malta

Cheap car rent in Malta

Cheapest return flights from Prague to Malta in September from 107€

Return flights