AirHint found the following cheapest return flights from Malta (MLA) to Manila (MNL) in September 2025 (see full year).

Return flights

17 Sep - 16 Oct	Ryanair
01 Sep - 22 Sep	Etihad Airways
01 Sep - 10 Oct	Etihad Airways
04 Sep - 10 Oct	Etihad Airways
03 Sep - 29 Sep	Lufthansa
01 Sep - 30 Sep	Etihad Airways
11 Sep - 18 Sep	KM Malta Airlines
17 Sep - 28 Sep	Etihad Airways
09 Sep - 08 Oct	Air France
08 Sep - 08 Oct	KLM
20 Sep - 21 Oct	KLM
06 Sep - 08 Oct	KLM
13 Sep - 27 Sep	KLM
19 Sep - 26 Sep	KM Malta Airlines
25 Sep - 10 Oct	KM Malta Airlines
08 Sep - 13 Sep	KLM
09 Sep - 09 Oct	Turkish Airlines
01 Sep - 04 Sep	KM Malta Airlines
28 Sep - 28 Oct	Air France

Also check the deals for one-way flights from Malta to Manila in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Malta to Manila in September from 627€

Return flights