AirHint found the following cheapest return flights from Lyon (LYS) to Malta (MLA) in September 2025 (see full year).

Return flights

30 Sep - 02 Oct	Volotea
30 Sep - 07 Oct	Volotea
03 Sep - 11 Sep	Vueling Airlines
14 Sep - 22 Sep	easyJet
29 Sep - 06 Oct	Vueling Airlines
01 Sep - 10 Sep	Vueling Airlines
04 Sep - 11 Sep	easyJet
13 Sep - 20 Sep	Vueling Airlines
06 Sep - 13 Sep	Air France
28 Sep - 05 Oct	easyJet
23 Sep - 29 Sep	Volotea
10 Sep - 16 Sep	Volotea
01 Sep - 08 Sep	easyJet
20 Sep - 27 Sep	easyJet
28 Sep - 05 Oct	Air France	direct
29 Sep - 06 Oct	KM Malta Airlines	direct

Also check the deals for one-way flights from Lyon to Malta in September.

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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Cheapest return flights from Lyon to Malta in September from 139€

Return flights